Plant MITE

SE3320480

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7945
citrus sinensis
SE3320480
Mutator
M46
chr2:13282719-13282889
ATTTTTAAA
GGAGCTGGCTAAGTTACAGATTCTGTAACTTACAGATCCAA

Secondary structure and sequence

TSD TIR

5'

3'

ATTTTTAAA   G TGG   A        T        T    G      ---------     -  -   CTCTCATTGGCTGCATTTGC
         GGA C   CTA GTTACAGA TCTGTAAC TACA ATCCAA         GTGTA GC CAA                    
         ||| |   ||| |||||||| |||||||| |||| ||||||         ||||| || |||                     
         CCT G   GAT CAATGTCT AGACATTG ATGT TGGGTT         CGTGT GA AGG                    
AAATTTTTA   G TTA   G        T        C    A      ACCCTTCGT     G  T   ACTCCTCTCTCTTTTTGGCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320480

ATTTTTAAAGGAGCTGGCTAAGTTACAGATTCTGTAACTTACAGATCCAAGTGTAGCCAACTCTCATTGGCTGCATTTGCACGGTTTTTCTCTCTCCTCAGGATAGGTGTGCTGCTTCCCATTGGGTATGTACGTTACAGATTCTGTAACGTAGATTGGTCCATTTTTAAA

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