SE3330483

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7948
  • citrus sinensis
  • SE3330483
  • hAT
  • Hat1
  • chr1:17628233-17628442
  • AAATAAAA
  • AGTAGTGCTACACATCTCAAATTTTTTATTTTAAAAAATTATCCCAAATGATGTGTCATTAATTGAGTGGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
AAATAAAAAC                                     A           G          A     G      ATAATTCTT     --     AA
          AGTAGTGCTACACATCTCAAATTTTTTATTTTAAAAA TTATCCCAAAT ATGTGTCATT ATTGA TGGTTG         TACAA  GATTC  
          ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| ||||||         |||||  |||||   
          TCATTACGATGTGTAGGGTTTAAAAAATAGAGTTTTT AATAGGGTTTA TATACAGTAA TAGTT ACCAAC         ATGTT  TTAAG  
AAAAATAAAC                                     C           A          A     A      CACTCTATT     AA     TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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