Plant MITE

SE3320486

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7951
citrus sinensis
SE3320486
Mutator
M71
chr9:1852085-1852255
TTGAAATTG
A

Secondary structure and sequence

TSD TIR

5'

3'

 TTGAA  -  --   GAAG ---  A G  ACAG     GTAAGTAAC   AGCCAATGGGGAACTCCCACGGGTGCTAGAGGAGAGAGAAAGAGG
      AT TG  GGA    T   CT T TT    CTTCT         AGC                                             
      || ||  |||    |   || | ||    |||||         |||                                             T
      GT CC  TAC    C   TC C CG    CTTCG         ACG                                             
GTTAAA  T  TG   ---- GAT  - A  ---T     ---------   TTCATTGTCGAAGCTTGAAAGGGTAAAGGTAGTGGTACGTAACCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320486

TTGAAATTGGGAGAAGTCTATGTTACAGCTTCTGTAAGTAACAGCAGCCAATGGGGAACTCCCACGGGTGCTAGAGGAGAGAGAAAGAGGTCCCAATGCATGGTGATGGAAATGGGAAAGTTCGAAGCTGTTACTTGCAGCTTCTGCACCTTAGCCATGTCCTTGAAATTG

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