SE3320492

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7957
  • citrus sinensis
  • SE3320492
  • Mutator
  • M48
  • chr8:13378130-13378622
  • TTTCTAAAA
  • AAAGGGAAATTTTTAACCTACCCCCAAATAAATTGACATTTTGCACCGCGTCCCCAACAAATTTGACTTGTTGCACCGCGCCCCCAATTCCGTTATTTTCTCAGTTAAGTTTAACGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTCTA                                                   C     C   T    C                            T   C       AG         GGAG GG   -AA   ---   - TTC   CCTTAAATTAATTTTAATGGGAATTCTCTTTATTGCAATTGAAATAAAAATCTTTAAAAAATTAAAGGAAAAATAATAGTGGTGACAATGTACATGT
      AAAGGGAAATTTTTAACCTACCCCCAAATAAATTGACATTTTGCACCGCGT CCCAA AAA TTGA TTGTTGCACCGCGCCCCCAATTCCGTTA TTT TCAGTTA  TTTAACGGT    G  TAA   TTG   GAA G   ATT                                                                                                 
      ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||| ||| |||||||  |||||||||    |  |||   |||   ||| |   |||                                                                                                  
      TTTCCCTTTAAAAATTGGATGGGGGTTTATTTAACTGTAAAACGTGGCGCG GGGTT TTT AGCT AACAACGTGGCGCGGGGGTTAAGGCAAT AAA AGTTAAT  AGATTGTCG    C  ATT   AAC   CTT C   TGT                                                                                                 
AAAATC                                                   T     T   T    T                            T   A       AA         -AAG AG   GAA   TAA   A ---   TTTTACGGGGAGATATACTTTTTTTTTTGTTTTATAAATCGAGTAAATTAAAAAATTTCCGAAAAAAAAAGTTAATGTTATTTTTTTAAAAGAACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3