SE3320493

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7958
  • citrus sinensis
  • SE3320493
  • Mutator
  • M74
  • chr1:17671684-17672274
  • TTCAAGGAA
  • TCAAGGAAGAGTGACGCTATTGGCACCCCTCTA

Secondary structure and sequence

TSD    TIR
5'



3'
T  AAG       GAC          CC      TATCTCTTATG          TAT       T   -AAA    --C   TTATATTTAAATTATATTA       AA    ------------   -   T      ACCTATG     -  A -   TTTCTCCATTATAAACTCATTGAATCTATAAATTTTGAAAAAATAATGAATTGTCATACAATAAGAATTTGATCTAAATATAAACAAAGTTTTTGTAGGAAAAATAATTTTGTGAAGTTTGTTTACTTAGGCCAATTTTTTTTTTTAGAGATTCACA
 TC   GAAGAGT   GCTATTGGCA  CCTCTA           AAACTCCTTT   TCTTTAT TAT    TTTA   CCT                   AAAATAA  CTTA            TCT AAT AAACCC       TTTTC TT T TTT                                                                                                                                                             
 ||   |||||||   ||||||||||  ||||||           ||||||||||   ||||||| |||    ||||   |||                   |||||||  ||||            ||| ||| ||||||       ||||| || | |||                                                                                                                                                              
 AG   CTTCTCA   TGATAACCGT  GGAGAT           TTTGAGGAAA   AGAGATG ATG    GAAT   GGA                   TTTTATT  GAGT            AGA TTA TTTGGG       CGTGG TA T AAA                                                                                                                                                             
A  GAA       ACC          AT      TGTAATAAAAA          ---       C   AGAA    TAA   -------------------       GA    AAACAACATAAA   A   T      ------A     C  - G   TTTTTTTTTAATAATCCGTGAGAGAGAGCGGGAAGAAGGTAAGGTTTGGTGAAAGTTAGAGAATAACTAATATAGTAAGTACTTAAATAATAAAAATAGAGATGTACAGAAACAAAAAAGATTATCCATTATTGGAATCATATATGTATTTCTGCAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End