Plant MITE

SE3320499

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7964
citrus sinensis
SE3320499
Mutator
M78
chr2:4027824-4027985
CTGTTTTCA
CAGGAGAGGGCTAACTTACAGATTCTGTATGTAACAGCCCTCACA

Secondary structure and sequence

TSD TIR

5'

3'

CTGTTTT    A   --G                    T  A     - -      ----T  -   G   TAAATAGTGTTTGGCT
       CAGG GAG   GCTAACTTACAGATTCTGTA GT ACAGC C CTCACA     GA ATA TGT                
       |||| |||   |||||||||||||||||||| || ||||| | ||||||     || ||| |||                 
       GTCC CTC   CGATTGAATGTCTAAGACAT CA TGTCG G GAGTGT     CC ACA CCC                
 ACTTTT    -   GAA                    T  A     A T      TTGAA  A   -   AGGGTGAGCCTGGGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320499

CTGTTTTCAGGAGAGGGCTAACTTACAGATTCTGTATGTAACAGCCCTCACATGAATAGTGTTAAATAGTGTTTGGCTGTGGGTCCGAGTGGGACCCACAACCAAGTTTGTGAGTGAGCTGTAACTTACAGAATCTGTAAGTTAGCAAGCTCCCTGTTTTCA

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