SE3320501

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7966
  • citrus sinensis
  • SE3320501
  • Mutator
  • M79
  • chr1:27144828-27144997
  • AAACTTATA
  • GGAGTTGGCTAAGTTACGGATCATGTAACTTACAGATCCAGTGGCTGCCAACTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAACTTATA      G    A         C       T    G      ----    T    --AC   --------CATTACTT    TT
         GGAGTT GCTA GTTACGGAT ATGTAAC TACA ATCCAG    TGGC GCCA    TCC                GCAT  
         |||||| |||| ||||||||| ||||||| |||| ||||||    |||| ||||    |||                ||||   
         CCTCGA CGAT CAATGCCTA TACATTG ATGT TGGGTT    ACCG CGGT    AGG                TGTA  
ATAGTCAAA      A    A         A       T    G      ACCA    T    ACAC   ACTCCTCTCTCTTTTT    AC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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