SE3320506

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7971
  • citrus sinensis
  • SE3320506
  • Mutator
  • M72
  • chr5:15864072-15864651
  • TTTATCTAA
  • AAGGGAAATTATCATTGCACCACTTTTGTTTTGCCTTACGTTCAACCAACCACCACAAAATTCTAACATATTCTTTGCACCACCTTTCTTTTTAATTTTATATCAATTAGCCACTTTTTCACTAACGTTGTTAAATAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTATCT                                G     C     A                 C      A       C     C           T   A                  T                     TTTAA                              ACAA          C          C              ---                         T      A         C      A   GTGCTCAGTTGATT
       AAGGGAAATTATCATTGCACCACTTTTGTTTT CCTTA GTTCA CCAACCACCACAAAATT TAACAT TTCTTTG ACCAC TTTCTTTTTAA TTT TATCAATTAGCCACTTTT CACTAACGTTGTTAAATAATT     AAAATGATAATTTTACCCCTAAATAAATTA    ACCATTTTAT TTATAAAAAC TTTGAAAAATAAAA   ATTATAATTATAAAAATACCCCTAA TTTAAT AAAATAAAT TCAACT GAG              
       |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||| ||||||| ||||| ||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||     ||||||||||||||||||||||||||||||    |||||||||| |||||||||| ||||||||||||||   ||||||||||||||||||||||||| |||||| ||||||||| |||||| |||              T
       TTCCCTTTAATAGTAACGTGGTGGAGATAAAA GGAAT CAAGT GGTTGGTGGTGTTTTAA ATTGTA AAGAGAC TGGTG AAAGAAAAATT AAA ATAGTTAATCGGTGAAAA GTGATTGTGGCAATTTATTAA     TTTTACTATTAAAATGGGGATTTATTTAAT    TGGTAAAATA AATATTTTTG AAATTTTTTATTTT   TAATATTAATATTTTTATGGGGATT AAATTA TTTTATTTA AAAATA TTT              
AATCTAT                                A     A     A                 T      C       A     A           T   C                  C                     TTTCA                              CTTC          A          -              TTT                         T      A         -      T   AGATTTAAATTATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End