Plant MITE

SE3320513

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7978
citrus sinensis
SE3320513
Mutator
M2
chr2:10112738-10112957
TTATATTAT
GAGTAATGATACAGCTACAAACTCTTGTACAAAATAATTTTGTACAAACTGACATGACAT

Secondary structure and sequence

TSD TIR

5'

3'

TTATATTAT             G                   ATA          A     CA  A   TAATTC           GA      AAA  A  AAAA   AA
         GAGTAATGATACA CTACAAACTCTTGTACAAA   ATTTTGTACA ACTGA  TG CAT      ATTGGTTGAAT  AAATAT   TT AT    ACA  
         ||||||||||||| |||||||||||||||||||   |||||||||| |||||  || |||      |||||||||||  ||||||   || ||    |||  T
         CTCATTACTATGT GGTGTTTGAGAACATGTTT   TAAAACATGT TGACT  AC GTA      TAACCAACTTA  TTTATA   AA TG    TGT  
TATTATATT             A                   GAA          G     AC  C   CTATTC           -A      ATG  C  --GG   AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320513

TTATATTATGAGTAATGATACAGCTACAAACTCTTGTACAAAATAATTTTGTACAAACTGACATGACATTAATTCATTGGTTGAATGAAAATATAAATTAATAAAAACAAATCATGTGGGTCAAGTAATATTTAATTCAACCAATCTTATCATGCCACATCAGTGTGTACAAAATAAGTTTGTACAAGAGTTTGTGGATGTATCATTACTCTTATATTAT

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