SE3350522

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7987
  • citrus sinensis
  • SE3350522
  • PIF/harbinger
  • To8
  • chr4:9665432-9665832
  • TAA
  • AGGTTTCGTTTGGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  -    C        CA    TTCAAGTAAAGCTTATTTAAATAGAGTTTTTACTAAAAAAAGTTTAGTTGTTTGGTTGTCAATAAGAACTTTTATTAAAAATTTATGAAATTACTTTAATATGTAGGTTTTTTTAAAGTTATATTATAAAAATAATAAATAAGATTTTCAAATAAGTAGATGATATTTTAGATATTT
  AG GTTT GTTTGGTA  ACTT                                                                                                                                                                                 
  || |||| ||||||||  ||||                                                                                                                                                                                 T
  TC CGAA CAAACCAT  CGAA                                                                                                                                                                                 
AA  A    -        AC    TAAATTACCAATATTCATGAATAAATTAAAATATTCGAGAATAGTATTAAAAACAACAACAAACCAACAAAAAGATTATCTCGAAAACTTTGAATTTATTCTATAAAATGGAGATGATCGTTTTTGAGTTTAAAACCTGAAAATTCTCATCTCCAACTTTTCGAAAAAAATTTACAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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