Plant MITE

SE3320523

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7988
citrus sinensis
SE3320523
Mutator
M67
chr9:8066484-8066679
TATATACTA
TATACTAGGAAAAAGATCATCTCCTGATCTG

Secondary structure and sequence

TSD TIR

5'

3'

 TA    C     AA A   CA     T      ----  ---   TCATGAGCTTTTAAAGATCTCATGCCATGTGTCTTTAAGTAATAGTGTATGGATAT
   TATA TAGGA  A GAT  TCTCC GATCTG    AG   CTC                                                        
   |||| |||||  | |||  ||||| ||||||    ||   |||                                                        G
   ATAT ATCCT  T CTA  AGAGG CTAGAC    GG   AGT                                                        
ATC    -     AG A   AA     C      TAGA  AGG   TGTTTATATGTACACCACTAACCAATAATTATTTTATTTTTTATTTCTTCAATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320523

TATATACTAGGAAAAAGATCATCTCCTGATCTGAGCTCTCATGAGCTTTTAAAGATCTCATGCCATGTGTCTTTAAGTAATAGTGTATGGATATGATTTAACTTCTTTATTTTTTATTTTATTAATAACCAATCACCACATGTATATTTGTTGAGGAGGAGATCAGATCCGGAGAAAATCATGATCCTATATACTA

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