Plant MITE

SE3350528

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7993
citrus sinensis
SE3350528
PIF/harbinger
To4
chr5:22487714-22487980
TTA
AGGGTGCGTTTGGGATTGAAGTTG

Secondary structure and sequence

TSD TIR

5'

3'

TT                   --A    GGC   T        ------    CTTCAGCACTAAAGTGTTTGGTAAACACTAACTACTGTAGCTTTTAAGCTATGTTGATATGATTTTTCACTTGTATAAATAAAATT
  AGGGTGCGTTTGGGATTGA   GTTG   AGC GTAGCTTA      AAAG                                                                                      
  |||||||||||||||||||   ||||   ||| ||||||||      ||||                                                                                      T
  TCCCACGCAAACCCTAACT   CGAC   ATT GAAAACGA      TATT                                                                                      
AT                   CTA    ---   -        CACTTT    TCGACATTAATACTTTGTTTTCAATTATTATATATCATTTATATTTAAAATTTATTATTAAAACTATTTTAATAATTTCTATATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3350528

TTAGGGTGCGTTTGGGATTGAAGTTGGGCAGCTGTAGCTTAAAAGCTTCAGCACTAAAGTGTTTGGTAAACACTAACTACTGTAGCTTTTAAGCTATGTTGATATGATTTTTCACTTGTATAAATAAAATTTATTATATCTTTAATAATTTTATCAAAATTATTATTTAAAATTTATATTTACTATATATTATTAACTTTTGTTTCATAATTACAGCTTTATTTTCACAGCAAAAGTTACAGCATCTCAATCCCAAACGCACCCTTA

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