SE3320531

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7996
  • citrus sinensis
  • SE3320531
  • Mutator
  • M83
  • chr8:3477726-3478262
  • AAACTAATT
  • TTGGGTAAAAGTCCATTTAGTCCATGTATTTTAATATTAGTGTCCATTTAGTCCCTATATCTTAAAAAATATCTCGAAACATCCATGCCGTTAAAGTATTGATATCTCTACCATTACTTTTTATTTCTTTTGGT

Secondary structure and sequence

TSD    TIR
5'



3'
AAACTAA            C        C            T                   C     C  A      A             A                      C    A   C                 TTACTTTGGT                             AA           A                 AAAAAT                   C     ATAAAAAAATATATTAATTT    C   TGGTAGTTTGCATA
       TTGGGTAAAAGT CATTTAGT CATGTATTTTAA ATTAGTGTCCATTTAGTCC TATAT TT AAAAAT TCTCGAAACATCC TGCCGTTAAAGTATTGATATCT TACC TTA TTTTTATTTCTTTTGGT          TTACTTTTACAATATTACCCTTTTATAAT  TTTTTTTGTTT GACATTAATAAAAAAAT      TAAATTACCAATTTAACCC AAAAA                    TGCA ACT              
       |||||||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||| || |||||| ||||||||||||| |||||||||||||||||||||| |||| ||| |||||||||||||||||          |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||      ||||||||||||||||||| |||||                    |||| |||              C
       AACCCATTTTCG GTAAATCA GTACATAAAATT TAATCATAGGTAAATCAGG ATATA AA TTTTTA AGAGCTTTGTAGG ACGGCAATTTTATAACTATGGG ATGG AAT AAAAATAAAGAAAACCG          AATGAAAATGTTATAATGGGAAAATATTA  AAAAAAACAAA CTGTAATTATTTTTTTA      ATTTAATGGTTAAATTGGG TTTTT                    TTAA AAA              
TTAATCC            A        A            C                   T     A  A      C             G                      A    C   A                 ----------                             --           C                 ------                   A     -------------AAGATAA    -   TTAACAGTTTTTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End