SE3350537

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8002
  • citrus sinensis
  • SE3350537
  • PIF/harbinger
  • To4
  • chr7:6439217-6439495
  • TAC
  • GGGTGCGTTTGGGATTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAC                  -----     GGCAGTT  AGCTTAAAAGCTACAGCACTAAAGTATTTGGTAAACACTAGCTGCTGTAGCTTTTAAGCTATGTTGATATGATTTTTCACTTGTATAATATAAAATTTATTATAT
   GGGTGCGTTTGGGATTGA     TGTTG       GT                                                                                                         
   ||||||||||||||||||     |||||       ||                                                                                                         C
   CCCACGCAAACCCTAACT     ACATC       GA                                                                                                         
CAT                  CCACT     -------  AAATTCGATGTCAACGACACTTTTTTTTCAACATTAATACTTTGTTTTCAATTATTATATATCATTTATATTTAAAATTTATTATTAAAACTATTTTAATAATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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