SE3350539

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8004
  • citrus sinensis
  • SE3350539
  • PIF/harbinger
  • To4
  • chr7:6439217-6439495
  • GTA
  • GGGTGCGTTTGGGATTGAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTA                  -----   ---GA       TTTAAGCTACAGTTGCTGTGAAAAAAAAGTTGTAATTATGAAACAAAAGTTAATAATATATAGTAAATATAAATTTTAAATAATAATTTTGATAAAATTATT
   GGGTGCGTTTGGGATTGA     GGT     TGTAGCT                                                                                                      
   ||||||||||||||||||     |||     |||||||                                                                                                      A
   CCCACGCAAACCCTAACT     CCG     ATCGAAT                                                                                                      
ATG                  ACAAC   TCAAC       TTTCGATGTCGTGATTTCATAAACCATTTGTGATCGACGACATCGAAAATTCGATACAACTATACTAAAAAGTGAACATATTATATTTTAAATAATATAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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