SE3350540

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8005
  • citrus sinensis
  • SE3350540
  • PIF/harbinger
  • To4
  • chr8:7937217-7937495
  • ATA
  • GGGTGCGTTTGGGATTGAGATGCTGTAGCTTTTAAGCTACAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA                   ---AT  ---        TT             --     AAAAAAA  TGTAATTATGAAACAAAAGTTAATAATATATAGTAAATATAAATTTTAAATAATAATTTTGATAAAATTATTAAAG
   GGGTGCGTTTGGGATTGAG     GC   TGTAGCTT  AAGCTACAGCTGC  TGTGA       GC                                                                            
   |||||||||||||||||||     ||   ||||||||  |||||||||||||  |||||       ||                                                                             
   CCCACGCAAACCCTAACTC     CG   ACATCGAA  TTCGATGTCGTGA  TCACA       AA                                                                            
ATA                   CAACC  TCA        TT             TT     -------  CCATTTGTGATCGATGACATTAAAAATTTAATACAACTATACTAAAAAATGAACATATTATGTTTTAAATAATATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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