SE3320548

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8013
  • citrus sinensis
  • SE3320548
  • Mutator
  • M82
  • chr2:30397632-30397820
  • TTTTAACAT
  • GGATCAGGATTCTTTCGTGATCTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTAACAT   TC           G        ----------------TCAT     GA  -AA   A  --C      TGAT  GT   TAATAAAAAAAAA
         GGA  AGGATTCTTTC TGATCTAA                    GTCTT  GC   ATA CT   AATTGT    TG  TGT             
         |||  ||||||||||| ||||||||                    |||||  ||   ||| ||   ||||||    ||  |||              
         CCT  TTCTAGGAGAG ACTAGATT                    TAGAA  CG   TAT GA   TTAACA    AC  ACA             
TACAATTTT   TA           G        TGAAATGACTTAAAAAATTT     GA  GTA   A  AAA      --TC  AT   TAATCTAAATTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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