SE3320552

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8017
  • citrus sinensis
  • SE3320552
  • Mutator
  • M85
  • chrUn:35400852-35401020
  • TTGTAGTAA
  • TAGTAAAGGTCCGGCTATATTGGAATCGCTTTAAGGTAGACACCATTTCATAACCATACGATCAAAGTTATAA

Secondary structure and sequence

TSD    TIR
5'



3'
TTG  G  -     -CC      A     ATC             -   CAT  C        --   ATC     T    TGAATTTT
   TA TA AAGGT   GGCTAT TTGGA   GCTTTAAGGTAGA CAC   TT ATAACCAT  ACG   AAAGT ATAA        
   || || |||||   |||||| |||||   ||||||||||||| |||   || ||||||||  |||   ||||| ||||        T
   AT AT TTCCG   CCGATG AACCT   CGAGATTCCATCT GTG   AA TATTGGTG  TGC   TTTCA TATT        
  A  G  G     ATA      A     CAA             C   TTT  -        AA   --A     C    TATCATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End