SE0950001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8018
  • Carica papaya
  • SE0950001
  • PIF/harbinger
  • To1
  • supercontig_76:589638-590212
  • TAA
  • ACACCTTGTTTGAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TA            A  AAATTTT   A     TAA             ----    CA    T   A     ATGACACAGGATGAGAATGACAAAAAAATTTTATATTTGGATGATTATATATTAATATATGTTAATGATATATTTTTATTTGGATGATAGGATGGTATGATTATATTTTCAGTCAAATTACTAATTTACTCATACATATTATATGTAATAATAAATGATATATAAGAAGTATGTAATAAAAAAAAAAATTGTTTACTAATATAATTACATTTATATT
  ACACCTTGTTTG AT       AGT ATAGT   TTAATGTATGGTA    ATGA  GTGA TTG TGGCA                                                                                                                                                                                                                         
  |||||||||||| ||       ||| |||||   |||||||||||||    ||||  |||| ||| |||||                                                                                                                                                                                                                         T
  TGTGGAATAAAT TA       TTA TATCA   AATTACATACCAT    TGCT  CACT TTT TTAAT                                                                                                                                                                                                                         
AA            C  GCACTAC   C     TAA             AAGA    TA    -   -     ATAAACAAAATTGAAGATTAACATCGTTTGTCATACATTGGCTGTTTAAACCCTACTTAAAATTTTGGTGGTTTAGCCATTATACACTGCCCATACAATGAAAAAAGAGGAATATGGGAGTACATTATATGAATTAAGATAAAAGTAGGAATATTTAATAATAAATAAAATAATTTATATTTTTAAATTAAACTAATACACATTATTAATAAATAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End