SE3250007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8118
  • Prunus persica
  • SE3250007
  • PIF/harbinger
  • PrpP3
  • scaffold_1:82992-83368
  • TTA
  • AGGGCCCATTCGGTAAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT       A  C     A  ----GG    TTTTATTTTTAGATAATAAAAATTAGGCAAAAATACTTTTGATGGCCCAAAATTAGAAAATATTGAGAATGTTTTCATAAAATGAAAACAAGTTCGTGAGTATTTGTAGAAAACAGAAAAAAGTTGTTTTCATTCTCATAGGAAACGTTTTCATAAAAAT
  AGGGCCC TT GGTAA GG      TTGT                                                                                                                                                                
  ||||||| || ||||| ||      ||||                                                                                                                                                                 
  TCCCGGG AA CCATT CC      TCTT                                                                                                                                                                
AT       C  A     -  AAAGCC    ACTAAAGAATCTTATAAAAGTCTCTTACTTTTGTTCTTTTGCTTAAACGTAAAAGTCCTTTACTTTTACGCAGACCATCTAATTAATCTTTTGTATAAGTTTTCTGTTTTTGTTACTTTTGCATATAACATCATATTAAACTTTATTATTATACACTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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