SE3220013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8124
  • Prunus persica
  • SE3220013
  • Mutator
  • PrpM4
  • scaffold_5:17008020-17008449
  • TAAAAAATA
  • TAGGATTAACTACATTTTACTCCCTGCAGGTTAGGGTCATTATCGAAATGGGCACCCAGGTTTCAATTTCATCAATATGAAACCCAACGTTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAA                         G      -AG                   A  C                        A             -------AACA     A  TTATGCACTCTGTCAACTTCACCGTTTGATTTTCTGTAAAATTGTTATCAAATTACACACACCATTGTCATTTTCTTCATTGTTTTCTTTTACACAT
       TAGGATTAACTACATTTTACTCCCT CAGGTT   GGTCATTATCGAAATGGGC CC AGGTTTCAATTTCATCAATATGAA CCCAACGTTTTTT           TGACT AA                                                                                                 
       ||||||||||||||||||||||||| ||||||   ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||           ||||| ||                                                                                                 C
       ATCCTAATTGATGTAAAATGAGGGA GTCCAA   CCAGTAATAGCTTTACCCG GG TCCAAAGTTAAAGTAGTTATACTT GGGTTGCAAAAAA           TTGAG TT                                                                                                 
ATAAAAA                         A      ATA                   A  C                        A             ACTATTTTTCT     -  GCATAATTTAGACTGGGTTAATGCGTGAGGCAGTTGAAGTGGCAAACTAAAAAACAATTGAACCACTGTACCGTCCATCCTATCAGTGAAAATACGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3