SE3250016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8127
  • Prunus persica
  • SE3250016
  • PIF/harbinger
  • PrpP2
  • scaffold_2:1171678-1172156
  • TAA
  • AGAGCATGTCCACCGCAGGGACTTTAGCCAGGGCAAGAGGC

Secondary structure and sequence

TSD    TIR
5'



3'
TA       G      --GC    A  TTA  C        A   --CCATT    CAATT     T   C  CGCAGCACCTGCAGCCCGGGCAAGCCCTGGGTCCCACCAGCCTGGGCAAGCCCAGGGGCAGATTTTGCCTGAGCTTCAGTCCTAGGGCGCTGATGTCAGTGGTGATGTCACGCTGACGTCAGCGAGTCAAAAAAATTGAAAAAAAGGGAAAAAAAATCAAAATTTTTTTTTAA
  AGAGCAT TCCACC    AGGG CT   GC AGGGCAAG GGC       CCCT     TTGGA CTC AG                                                                                                                                                                             
  ||||||| ||||||    |||| ||   || |||||||| |||       ||||     ||||| ||| ||                                                                                                                                                                              
  TCTCGTA AGGTGG    TCCC GA   CG TTCCGTTC CTG       CCGA     CGGTG ATA AG                                                                                                                                                                             
AA       G      GTAT    -  TTC  T        -   TTCATTC    -----     -   -  TACACTTATCATCGTCGGAACGGAAAAAATCAAGGTGGGGTTTTCCGATCCCGTTCCCGTTCCTTTTTTTTTCTTATACGTTGTTTTATATTTAAACAATACATAAATATCCCTTTCACTTATTTTAACAATACATAAATATCCCTTTTGTAAGTATTAAAAAACCATAAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End