SE3250018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8129
  • Prunus persica
  • SE3250018
  • PIF/harbinger
  • PrpP6
  • scaffold_8:20873036-20873375
  • TCT
  • GGGCTTGTTTGGTAGGGAGGACTAGACTAAACTAGAAAAATACCTACATTTCATGTGCATTGAAGGCATAATATGGATATGTTGCCTAACTTTGAGGAAGAATGGGGACTCTCTATAAGAGGTTGATGACTAAAACTTATCCCCCCTAATCCCCT

Secondary structure and sequence

TSD    TIR
5'



3'
TCT  G        G      ---------------           A     A     A C               T G                  -    C       T     A   T    -   CTC                              C C       -  TGA
   GG CTTGTTTG TAGGGA               GGACTAGACTA ACTAG AAAAT C TACATTTCATGTGCA T AAGGCATAATATGGATAT GTTG CTAACTT GAGGA GAA GGGG ACT   TATAAGAGGTTGATGACTAAAACTTATCCC C TAATCCC CT   
   || |||||||| ||||||               ||||||||||| ||||| ||||| | ||||||||||||||| | |||||||||||||||||| |||| ||||||| ||||| ||| |||| |||   |||||||||||||||||||||||||||||| | ||||||| ||   A
   CC GAACAAAC ATCCCT               CCTGATCTGAT TGATC TTTTA G ATGTAAAGTACACGT A TTCCGTATTATACCTATA CAAC GATTGAA CTCTT CTT CCTC TGA   GTATTCTCCAACTACTGATTTTGAATAGGG G ATTAGGG GG   
TCT  G        A      CCCGATCTAACCTGA           C     A     C A               T G                  A    A       C     A   -    G   TAA                              A T       T  TAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End