SE3250029

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8140
  • Prunus persica
  • SE3250029
  • PIF/harbinger
  • PrpP10
  • scaffold_4:6529528-6529905
  • TAA
  • ATGGTGCGTTTGGATGAGGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                      AAAAACTT     TTTGACAAAACTCAGAATTTCTAAATTGACATGAACCAATTCCGGTGTTTGGATTAAAAAACATAGAAATTTAGAAATTCCGCGTGGAAAAAAACATGGAATTTGGAGATCATAAATCCCAAGTTTAAATTCTATCTAAAAGTCGTCATTTC
  ATGGTGCGTTTGGATGAGGGAA        GGAAT                                                                                                                                                        
  ||||||||||||||||||||||        |||||                                                                                                                                                         
  TGTCACGCAAACCTACTCCTTT        ATATT                                                                                                                                                        
AA                      AAATTTTC     TCCTAATGTATTTACTGCCTTAAATTTTACTGTCTTTAATTACAAGATCTTAAACATTTCAAAGAACAAACCCACTGACTAAATTTTGTGCCTTAAATTGGAAATAAACATTTCAATAGAAAAAGAATTTGAGTTAGAGAGAACCCTAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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