SE3250046

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8157
  • Prunus persica
  • SE3250046
  • PIF/harbinger
  • PrpP12
  • scaffold_7:12799207-12799611
  • TTA
  • AGAGCATATCCAAGGGAAGAGGCAAAAGAGTAGGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT       A                  -A             T   TTGCCTTGCCACAACAGCATTTTCATGCGCCAAGGGAAGAGGCAAATGGGTAGGCAAAATATACCTACTCTCCCCCAACAAGGCAATATTGCCTACTCCAAAGTGAAGAGGTATATTGGGCCCCACTGCTTTTTATAATAAAATACCATCTCCACT
  AGAGCAT TCCAAGGGAAGAGGCAAA  GAGTAGGCAAACC CAT                                                                                                                                                            
  ||||||| ||||||||||||||||||  ||||||||||||| |||                                                                                                                                                            C
  TCTCGTA AGGTTCCCTTCTCCGTTT  TTTATCCGTTTTA ACA                                                                                                                                                            
AT       G                  AC             -   TGATATTGTTGGATCCACCGTACAACGGATGGGTAAACGGAGTACTTTTTTCAACCAGTGAGTTTCCCTGATCCGTTACGTTCAGATGTTTGGTAATAATATAATAAATAAAAATAGAAATGTAAAAAATAAAATAAAATATCTTTTATCCACTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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