Plant MITE

SE3220047

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8158
Prunus persica
SE3220047
Mutator
PrpM8
scaffold_3:17691441-17691606
TAAACATAA
AGGAAAATGCTAGGCTTATTATATTTTTCATACCTCATTGTGTACTACCTCTCTAATAGAAGTGGGCCCCA

Secondary structure and sequence

TSD TIR

5'

3'

TAAACATA   AA                       C     T             C           A    -   --   TTG
        AGG  AATGCTAGGCTTATTATATTTTT ATACC CATTGTGTACTAC TCTCTAATAGA GTGG GCC  CCA   
        |||  ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| |||| |||  |||    
        TCC  TTACGATCCGAATAGTGTAAAAA TATGG GTAACACATGGTG AGAGATTATCT CACC CGG  GGT   
AATACAAA   CA                       -     T             A           C    T   AT   TAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3220047

TAAACATAAGGAAAATGCTAGGCTTATTATATTTTTCATACCTCATTGTGTACTACCTCTCTAATAGAAGTGGGCCCCATTGTATTGGTAGGCTCCACCTCTATTAGAGAAGTGGTACACAATGTGGTATAAAAATGTGATAAGCCTAGCATTACCCTAAACATAA

Copy Cancel