SE3250048

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8159
  • Prunus persica
  • SE3250048
  • PIF/harbinger
  • PrpP7
  • scaffold_7:5727265-5727667
  • TCA
  • AGAGCATCCACAATGGGCTCCCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TC                -    C   AATCA          CAAATTTTAGGGAGGAATTGTAAAAATGCAACTCCAACCACGCTCCCTATACACCTCCTAAAATAGGGAGTCCTTTAGGAGCTCCTAAATCTGAGGAGAGAGAAAGGACTCCTAGTGGCTCCCTATAATTTAATGCTATTTTATTTAATGAGTATTTCAAAC
  AGAGCATCCACAATGG GCTC CTA     CCTCCTTAGA                                                                                                                                                                  
  |||||||||||||||| |||| |||     ||||||||||                                                                                                                                                                   
  TCTCGTAGGTGTTACT CGAG GAT     AAGAATCGAT                                                                                                                                                                  
AC                A    A   ----A          TTTAAATCGATTTTTATATTCTTTCGATAAAATCCTCAAGAGATTTTTTAAAGTTGAGGTTGGTATGAGGGATTAAACCTCTCAGTATTTACGATATTGAGAAAAAACTAACCGGGTAGAGATAATTTTTTATTTTATTTTTTATCAATCGTAATTTATTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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