Plant MITE

SE3220049

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8160
Prunus persica
SE3220049
Mutator
PrpM7
scaffold_6:5494152-5494434
ATATCTATA
GAATAATGCTATTCTTACTATATTTGTATATCACATTCTCATACCACCTTATGTAGCA

Secondary structure and sequence

TSD TIR

5'

3'

ATATCTATA  A         T            G   AT      -  C     A CTT    A   GATGA   - GACAGTTACATCAATTAAAATTATTTAATATTTTCTTTTATTTTATGATTTATTAACACTTTTAAA
         GA TAATGCTAT CTTACTATATTT TAT  CACATT CT ATACC C   ATGT GCA     GAT G                                                                  
         || ||||||||| |||||||||||| |||  |||||| || ||||| |   |||| |||     ||| |                                                                  A
         CT ATTACGATG GAATGGTGTAAA ATA  GTGTAA GA TATGG G   TACA CGT     AGA A                                                                  
ATATCTATA  C         T            A   GT      A  -     C TAC    C   ---AC   T TAGTATACGGTATAGTTAATTTAGTTATTCCACATAAAATTATTTCTTTCAAATTAATTGTTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3220049

ATATCTATAGAATAATGCTATTCTTACTATATTTGTATATCACATTCTCATACCACCTTATGTAGCAGATGAGATGGACAGTTACATCAATTAAAATTATTTAATATTTTCTTTTATTTTATGATTTATTAACACTTTTAAAAAAAATTGTTAATTAAACTTTCTTTATTAAAATACACCTTATTGATTTAATTGATATGGCATATGATATAGACATGCCACATCATGCGGTATAGAAATGTGTGATAAAAATGTGGTAAGTGTAGCATTACTCATATCTATA

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