Plant MITE

SE3220050

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8161
Prunus persica
SE3220050
Mutator
PrpM15
scaffold_7:10039970-10040175
CAATTTGTG
TGGAGATATTATAGAATACTACGGTAATACGGTCATGTGGTAC

Secondary structure and sequence

TSD TIR

5'

3'

CAATTTG      T           C          C             ATCTTA               A  A      ATT     ATACTA      AAA
       TGGAGA ATTATAGAATA TACGGTAATA GGTCATGTGGTAC      TACATGTGTTATAAT TA GTAGAT   TATAG      TTCCCT   
       |||||| ||||||||||| |||||||||| |||||||||||||      ||||||||||||||| || ||||||   |||||      ||||||    
       ACCTCT TAATATCTTAT ATGCCATTAT CTAGTGCACCATG      ATGTGCACAATATTA AT TATTTG   ATATT      AAGGGA   
GTATTTA      T           A          A             -ATAAC               A  C      -CT     AAATAA      GGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3220050

CAATTTGTGGAGATATTATAGAATACTACGGTAATACGGTCATGTGGTACATCTTATACATGTGTTATAATATAAGTAGATATTTATAGATACTATTCCCTAAAAGGAGGGAAAATAAATTATATCGTTTATCTAAATTATAACACGTGTACAATAGTACCACGTGATCATATTACCGTAATATTCTATAATTTCTCCAATTTATG

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