SE3230058

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8169
  • Prunus persica
  • SE3230058
  • hAT
  • Prph9
  • scaffold_5:17147905-17148505
  • CTCGTCGC
  • CGTCGCTAGGGGTGGGCGCGGTCCGG

Secondary structure and sequence

TSD    TIR
5'



3'
CT  T  -C            -   -T    TTCGGT    TTCT    TCA    -   A  --------   A  GGTATTATTTAATCGGTCCGGTTCGGTCCGGTTTAGGCAAAAAAATTTCGAAACCGGCCGGTTCGGTTCTAACCGGTTCCGGTCCGGTTCTGACCGGTTCCGGTTTTGAACCGGATTATTAATTTATTATTTTTTTAAATTTTTTTTTTTAAAAAAAATTTAAAATTTTTTTAATAAAAAAATTATAATAAATAACTTATTTTTTTAGCTTAAAAATGAACAAATAATCCAAT
  CG CG  TAGGGGTGGGCG CGG  CCGG      CCGG    CACC   AACC GGA CC        GAA TC                                                                                                                                                                                                                                         
  || ||  |||||||||||| |||  ||||      ||||    ||||   |||| ||| ||        ||| ||                                                                                                                                                                                                                                          
  GC GC  ATCCCCACCCGT GCC  GGCC      GGCC    GTGG   GGCT GGC CA        TGG CC                                                                                                                                                                                                                                         
 C  T  TC            A   CT    --TTTT    --TT    CTT    T   -  CTTTTTTT   -  TTTTTTTTGGCCAACTGGTTTTTTCAGTTGTTTGGCCTGGCCTTGGCCTGGCTTGGCCAAAGTTGGCCAAGGCCAAGACCAAAATGTAGAGAGGCGTGGCCTGGCCTGGCTTGGCCTGGCCAGTATATAAAATATAAATATAAAAATGTTTTAAAATTTTAGATTACGGTAAAAAATTGAAGATATTAGTGATTAAAAGGTTCAAGTTGAAGTTTTTTAAAGATTTACATACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End