SE3250060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8171
  • Prunus persica
  • SE3250060
  • PIF/harbinger
  • PrpP13
  • scaffold_1:11071311-11071701
  • TTA
  • AGGCCATCTCCAGACAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             A   A      AATGTAGTCCAAGGTTAAAAATTTAGCCTCCCAAAATATTAATTTTTTTTAGAATAGTACAGGACTAAATTTTTCCATCTCCAGCCATGTAGAGCTATATTTTAGGGTCCTTCATATTTTATTATTTTCAGAAGGAATAGAGGAGAGTGCTTTAATGATTGGTTGTTGAA
  AGGCCATCTCCAG CAT GGGCTA                                                                                                                                                                          
  ||||||||||||| ||| ||||||                                                                                                                                                                           
  TCCGGTAGAGGTC GTA CCCGAT                                                                                                                                                                          
AT             A   -      ATAGGGTTTATATCGGGATTTAATTACGTTTTGAGTAGAGGTCGGTACCCGATTTATTTTAAAACCGGTTTAAACCTCCCGGTGTAAACCGGGAAATAGGGAGATTGACCCGGTTTACATCAGATCGAAACCGGATCTGGTTTAAATATTATCCGGGGTAGGTACACAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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