SE3220076

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8187
  • Prunus persica
  • SE3220076
  • Mutator
  • PrpM27
  • scaffold_2:19830836-19831212
  • TTAAGCTAT
  • AGCTATTGGGTTAACTGGTGATTTGTCCCTGAACTTGTATCTAGGTTTCGATTTACCCCATATTCTTTTTTTTAAAGAAAATTAAGGACCCAAACTAATTTTTTTCCAGCCAATTTGCCCCTGAAAGTCAAAATATGCCACTTTCCATC

Secondary structure and sequence

TSD    TIR
5'



3'
TTA    ATT  G               -        C      C         A      CCA      T      AA                AA            CCA          -      AA        A     C        CATCCTA    C       AGGT  C     TCATTTCG
   AGCT   GG TTAACTGGTGATTTG TCCCTGAA TTGTAT TAGGTTTCG TTTACC   TATTCT TTTTTT  AGAAAATTAAGGACCC  ACTAATTTTTTT   GCCAATTTGC CCCTGA  GTCAAAAT TGCCA TTTCCATC       CTGT AAGTTGG    TA TTTTG        
   ||||   || ||||||||||||||| |||||||| |||||| ||||||||| ||||||   |||||| ||||||  ||||||||||||||||  ||||||||||||   |||||||||| ||||||  |||||||| ||||| ||||||||       |||| |||||||    || |||||        C
   TCGA   CC AATTGACCACTAAAC AGGGACTT AACATG ATTCAAAGC AAATGG   ATAAGA AAAAAA  TCTTTTAATTCCTGGG  TGATTAAAAAAA   CGGTTAAACG GGGACT  CAGTTTTA ACGGT AAAGGTAG       GGCA TTCAACC    AT AAAAC        
TTA    ATT  G               G        A      A         A      AAA      T      -G                CC            -AC          A      -G        G     T        ATAAAAC    A       ----  -     TATCTCTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End