Plant MITE

SE3230077

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8188
Prunus persica
SE3230077
hAT
Prph12
scaffold_4:22258557-22259133
ACGGTAAC
ACGGTAACCAGTGGCGGAGCC

Secondary structure and sequence

TSD TIR

5'

3'

     G  AAC             -----A  AAG  --     C   GGGGCCAACATATAAACCAAATAAGATATTAAAAAATTCAAAATTTCAACCTTAACAATGTATGTTAAAATAAAGGGCACAAAACAATTGTTTATTCAATTAGGTATCAAAATAACACTCGTCGTTCTTTAATATCTCGAAAACCGTATGTAATTGAGTCAATGCTAAACTTTGCTTCATATAGGAACAAAAATTTAAATCTCAATCCTTTTTTATTTGAGTAAAAGTATATTTCTTATTTGATAAAAG
   AC GT   CAGTGGCGGAGCC      GG   TT  ATGTG TGG                                                                                                                                                                                                                                                         
   || ||   |||||||||||||      ||   ||  ||||| |||                                                                                                                                                                                                                                                          
   TG CA   GTCACCGCCTCGG      TC   CG  CTTCC CCG                                                                                                                                                                                                                                                         
CAA  G  ---             AACAAA  ---  GA     -   GACCCGGGGGGGGTTTAAAAAATGAGGTAAATTAAAAACGAAAACGAAAGGATGTGTAAATCCTTCAGATATATTATTATCAGATTGTTATTTTACAAACACCGGGGGAGTGTTTTCTTTTCTATGCAAAGAGAGAGAAACGTTCATTTTCTCATTCACTAAAGTTTATCTTTCTGATTCATTAAAACCCGGGTGGTTATATAATTATTTTTTATTTTCATCGGTTAGTTTATTTCAAAGCTTTTTAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3230077

ACGGTAACCAGTGGCGGAGCCAGGAAGTTATGTGCTGGGGGGCCAACATATAAACCAAATAAGATATTAAAAAATTCAAAATTTCAACCTTAACAATGTATGTTAAAATAAAGGGCACAAAACAATTGTTTATTCAATTAGGTATCAAAATAACACTCGTCGTTCTTTAATATCTCGAAAACCGTATGTAATTGAGTCAATGCTAAACTTTGCTTCATATAGGAACAAAAATTTAAATCTCAATCCTTTTTTATTTGAGTAAAAGTATATTTCTTATTTGATAAAAGAGATTTTTCGAAACTTTATTTGATTGGCTACTTTTATTTTTTATTAATATATTGGTGGGCCCAAAATTACTTAGTCTTTCTATTTGAAATCACTTACTCTTTTACTTGCAAAGAGAGAGAAACGTATCTTTTCTTTTGTGAGGGGGCCACAAACATTTTATTGTTAGACTATTATTATATAGACTTCCTAAATGTGTAGGAAAGCAAAAGCAAAAATTAAATGGAGTAAAAAATTTGGGGGGGGCCCAGGCCCCTTCAGGCCTAAACAAGGCTCCGCCACTGACGGTAAC

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