SE3250079

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8190
  • Prunus persica
  • SE3250079
  • PIF/harbinger
  • PrpP6
  • scaffold_1:10889445-10889762
  • TAA
  • AGGGCTTGTTTGGTAGGAAGGACTAGACTAGACCAGAAAAATGCCTACATTTCATGTGCATTGAAGGCATAATATGGATATGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G        GTA  A               C  A                      AT G                  -    ---  TAACTTGGAGGAAAAATGGGGACTATCTATAAGAGGTTGATGACTAAAATTTATCCCCCCTAATCCCC
  AGG CTTGTTTG   GG AGGACTAGACTAGAC AG AAAATGCCTACATTTCATGTGC  T AAGGCATAATATGGATAT GTTG   CC                                                                    
  ||| ||||||||   || ||||||||||||||| || ||||||||||||||||||||||  | |||||||||||||||||| ||||   ||                                                                     
  TCC GAACAAAC   CC TCCTGATCTGATCTG TC TTTTACGGATGTAAAGTACACG  A TTCCGTATTATACTTATA CAAC   TC                                                                    
AA   G        AAC  C               A  G                      CT G                  A    ATA  CTACTTCCTCCTGATAAGTATGCTCCAACTACTGATTTTGAATAGGGAGTATTAGGGTGGTTAAAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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