SE3220080

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8191
  • Prunus persica
  • SE3220080
  • Mutator
  • PrpM7
  • scaffold_2:1105678-1105950
  • TTAAAAAAA
  • AAGAGTAATGCTACACTTACCACATTTTTATCCCACATTTCTATACCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAAA              A    C       T   C        C       CATG        T  CCATATTATAT               ------------------T  ATAAAGTGTATTTTAATTAAGACAATTAG
       AAGAGTAATGCTAC CTTA CACATTT TAT CCACATTT TATACCA    ATGTGGCA GT           GCCACATCAATTAAA                   CA                             
       |||||||||||||| |||| ||||||| ||| |||||||| |||||||    |||||||| ||           |||||||||||||||                   ||                              
       TTCTTATTACGATG GAAT GTGTAAA ATA GGTGTAGA ATATGGT    TACACCGT CG           CGGTGTAGTTAATTT                   AG                             
ATAAAAA              A    A       C   T        A       AGAA        -  ACTCCACCTGT               TAATAAATTATAAAAGAAA  AAAATACTAAATAAGGTTATAAATAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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