SE3250082

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8193
  • Prunus persica
  • SE3250082
  • PIF/harbinger
  • PrpP13
  • scaffold_1:11071311-11071701
  • TAA
  • AGGCCATCTCCAGTCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             T   -  -   ATATCCCAAATATAGCCCTAAATTAATGCAAAACTCATCTCCAGCCATGGGCTAAATAAAATTTTGGCCAAATTTGGAGGGCCACATTTGGCCCTTTATCCCTCTAACTGGGCCAAATGTAGTCTAGCTTTGGCCTAGACCAAATTTATAATAGGCCCCATCCATGTGTT
  AGGCCATCTCCAG CAT GG GCT                                                                                                                                                                          
  ||||||||||||| ||| || |||                                                                                                                                                                          T
  TCCGGTAGAGGTC GTA CC GAT                                                                                                                                                                          
AA             T   T  C   TTACATCAGGTTCCAATTTTTAAATCGGAGGGTTTTATAATTAAAAAAAATCTTATCATGTCCTGATTTAAAAAGGTAGAGGTCGGTACATCTCGATATAAAATCCCAGGAAGTATAAAATAATAAAAGTCTTCCTTATCTCCTCTCACGAAATTACTAACCAACAACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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