SE3220083

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8194
  • Prunus persica
  • SE3220083
  • Mutator
  • PrpM28
  • scaffold_1:38374116-38374851
  • TTATATATA
  • TATATATAGGCTTATTCATGTACATGCCCCCTGTGCTTTTAAACTTGT

Secondary structure and sequence

TSD    TIR
5'



3'
T        -                    C      C            CTCAA                                    CCCAAC         C             -   A  TC              A                                -------------                       G        A        AGACAAGTTTTT  GTTGCCATTTCCTCCTCCGGCCACCCCAAGCGACGACATGGGTATCAAAAGAACCAGCACGTTGTCCTCTACCAGCCTCACATCTCAGCCGCTGCCAACCGTGGATCGCAGGAAAAAGAAAGAAATTGTCAACTTTTTA
 TATATATA GGCTTATTCATGTACATGCC CCTGTG TTTTAAACTTGT     ATTACCACATGTGTTTGCAAACGGCTCAAAGTATCT      CTTTTAAAA CCGTCTTACGTTA CCC TT  GTCAGTTTTTTTGA GTTCTGTTACGAATGTTACTGTTCATCCCCCC             AATTCCAGAATAGCAGCCCCTCC CTTTGTTA TGTTCATC            GG                                                                                                                                           
 |||||||| |||||||||||||||||||| |||||| ||||||||||||     ||||||||||||||||||||||||||||||||||||      ||||||||| ||||||||||||| ||| ||  |||||||||||||| ||||||||||||||||||||||||||||||||             ||||||||||||||||||||||| |||||||| ||||||||            ||                                                                                                                                            
 ATATATAT CCGAATAAGTACATGTACGG GGACAC AAAATTTGAACA     TAATGGTGTACACAAACGTTTGCCGAGTTTCATGGA      GAAAATTTT GGCAGAGTGCAAT GGG AA  CAGTCAAAAAAACT CAAGGCAATGTTTACAATGACAAGTAGGGGGG             TTAAGGTCTTGTCGTCGGGGAGG GAAACAAT ACAAGTAG            CG                                                                                                                                           
         T                    A      A            AAATC                                    -AATTA         T             A   -  TA              G                                AGGGGGGGGAGAG                       G        G        ------------  AATAAATGGGAGGTTTTGAGTCTTTAAAGAGGATTGGTTGTGTTGATCGTCGTTCTTGTTGAACTCTCCAACTTTTTGGTATGGACTTAGCTTCGTTTACCACGAACCTTAGCGAGCTTGCTCGCTACCTCTAAAACCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End