SE3220085

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8196
  • Prunus persica
  • SE3220085
  • Mutator
  • PrpM29
  • scaffold_12:38184-38712
  • TTTCTGTTT
  • GGCTAAAAGTCATTTTTGGTCCCTGTAGTCTGGCACTTCAACCATTTTTGCTCCTATAGTTTCAATTCCGTCAATTTGACCCTGTAGTTTCATATTTGTAGCAATTCAATGACAAGTTAGTATTCCTGTCAATTTCTTTAACTGTGCAAGGGGCAATTTCGTCAACCCAAAATCCTTGAGCATAAAAGCTCGTTTGAAACTCCCCTAATTTCATATTAGGGCTTGAAATTGG

Secondary structure and sequence

TSD    TIR
5'



3'
TTTCTGTTT                             C                    C  CTA            C        GA  -C         A                 T    A         CC             A  T                                               C        --       AA   C                  G TCAT    G     G   --C  GG
         GGCTAAAAGTCATTTTTGGTCCCTGTAGT TGGCACTTCAACCATTTTTG TC   TAGTTTCAATTC GTCAATTT  CC  TGTAGTTTC TATTTGTAGCAATTCAA GACA GTTAGTATT  TGTCAATTTCTTT AC GTGCAAGGGGCAATTTCGTCAACCCAAAATCCTTGAGCATAAAAGCT GTTTGAAA  CTCCCCT  TTT ATATTAGGGCTTGAAATT G    TTGG TTTAG GTT   AG  
         ||||||||||||||||||||||||||||| |||||||||||||||||||| ||   |||||||||||| ||||||||  ||  ||||||||| ||||||||||||||||| |||| |||||||||  ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||  ||| |||||||||||||||||| |    |||| ||||| |||   ||   
         CCGGTTTTCAGTGAAAACCAGGGATATTA ACTGTGAAGTTGGTGAAAAC AG   ATCAAAGTTGAG CAGTTAAA  GG  ACATTAAAG ATAAACATCGTTAAGTT TTGT CAATCATAA  ACAGTTAAAGAAA TG TACGTTCCCCGTTAAAGCAGTTGGGTTTTGGGAATTCGTATTTTCGA CAGACTTT  GAGGGGA  AAA TATAATCCCGAACTTTAA T    GATT AGGTT CAA   TC  
TTTGTCTTT                             A                    T  TAC            A        AC  TA         C                 C    A         --             G  C                                               A        AA       --   T                  G TGAT    A     A   ACT  TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End