SE3250089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8200
  • Prunus persica
  • SE3250089
  • PIF/harbinger
  • PrpP16
  • scaffold_3:668338-668688
  • TAA
  • AGAGCATCTCCAAGGGAGATGTCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             GG  GA       TACCAAACATCAAATTTAA   TGATAGCTGATGTGGCAATTTGACATTTTACATAGCTTTGCACTCCACCAGATATGTCAAATTAAATTATTATTTTATTACATTTTAGTGTTGATTTATTTTTAATTAAAAAGAAAAGAAAAGAAATAATAAT
  AGAGCATCTCCAA  GA  TGTCAAA                   ATT                                                                                                                                     
  |||||||||||||  ||  |||||||                   |||                                                                                                                                     A
  TCTCGTAGAGGTT  CT  ACAGTTT                   CGG                                                                                                                                     
AA             GG  AC       ----------------TCA   TATATCTGTAAATTGTCGATCTTTATTGTAGAGTGTAGTGAGGTTGGCTATACAGTTTTGACTACACCTTACTTCCGATCTCCAACTTTACAATAAAAACTGTAGGGTTTTAGTTCTACAGTTTACTTATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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