SE3250097

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8208
  • Prunus persica
  • SE3250097
  • PIF/harbinger
  • PrpP9
  • scaffold_5:5447697-5448275
  • TAA
  • AGAGCATCCACAGTGGAGGGGTGTATAATGGGGTATATGTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TA                A         --AA      A  -T    AATA    C     GTCGC  GAATCAT     ATGGGAAGATGTAAATTGTTGGAAAAATACATCACAACCATGGAGATGTAAAATTAGATGCACATTTGCATATTTTTTTTACATCCTTTGCAAGCGGGACCCACAAAAGAAAAAGGGAAAGAGAAGGATTGGAATTCAAAATGGAAGGCCCAGATTTCATGCAATTTGCATTGCACTTCCAATGGCCCAGATTTCTACATAGATATTTTTATGTTAA
  AGAGCATCCACAGTGG GGGGTGTAT    TGGGGT TA  GTTA    TACA CCTTT     CG       CTCCA                                                                                                                                                                                                                         
  |||||||||||||||| |||||||||    |||||| ||  ||||    |||| |||||     ||       |||||                                                                                                                                                                                                                          
  TCTCGTAGGTGTCACC CCCCACATA    ACCCCA AT  CGGT    ATGT GGAAA     AA       TGTGG                                                                                                                                                                                                                         
AA                C         AAAA      C  TT    GAAA    A     -----  -------     AGGTCCCCCACATTTATGCAAAAAACGAGGTTACTTTTTGCTACATTTAGGTTTCTACGTATAAGCTAAACAAACACTATTAAGAAAAAACACAAAAAAAAAAAAACACAAAATTGAAAAAATTTAATAAAAATACACACAATCTAATAAAAATAAAAAGGTTGATTTACCTGGGTTTTTTTAAAATTAAACCTCTTGCATAATAAAATGGATGTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End