Plant MITE

SE3230099

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8210
Prunus persica
SE3230099
hAT
Prph17
scaffold_4:23749953-23750122
TTAAGATG
GCCAAGAATTCTATACTGCGGGCCTTATATATGGCCCTTAGGTGAGGCCTTATCTCTTAATCGTTGAATCA

Secondary structure and sequence

TSD TIR

5'

3'

TTAAGATG    -------  -A        C  C                                    C       TT A    AATT  TT
        GCCA       AG  ATTCTATA TG GGGCCTTATATATGGCCCTTAGGTGAGGCCTTATCT TTAATCG  G ATCA    GG  
        ||||       ||  |||||||| || |||||||||||||||||||||||||||||||||||| |||||||  | ||||    ||   
        CGGT       TC  TAAGATAT AC CCCGGAATATATACCGGGAATCCACTCCGGGATAGA AATTGGT  C TAGT    CC  
            AGAATAC  AG        C  T                                    A       GT C    ----  GA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3230099

TTAAGATGGCCAAGAATTCTATACTGCGGGCCTTATATATGGCCCTTAGGTGAGGCCTTATCTCTTAATCGTTGAATCAAATTGGTTAGCCTGATCCTGTGGTTAAAAGATAGGGCCTCACCTAAGGGCCATATATAAGGCCCTCACTATAGAATGACTCATAAGATGGC

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