Plant MITE

SE3220102

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8213
Prunus persica
SE3220102
Mutator
PrpM7
scaffold_3:18364223-18364454
ATATTAGAT
ATGAGTAATGCTACTCTTACCATATTTGTATACCACATTCTCATACCATTTTATGTGGCAGATGAAGTGGACAACCACATCAATTAAA

Secondary structure and sequence

TSD TIR

5'

3'

ATATTAG                                             C              G    A                      AAGTGTC    -AA  ATAAA
       ATGAGTAATGCTACTCTTACCATATTTGTATACCACATTCTCATA CATTTTATGTGGCA ATGA GTGGACAACCACATCAATTAAA       AATA   TC     
       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||       ||||   ||     A
       TACTTATTACGATGAGAATGGTGTAAACATATGGTGTAAGAGTAT GTGAAATACACCGT TACT CACCTGTTGGTGTAGTTAATTT       TTGT   AG     
TAGATTA                                             A              A    C                      AATTAAA    AAA  AAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3220102

ATATTAGATGAGTAATGCTACTCTTACCATATTTGTATACCACATTCTCATACCATTTTATGTGGCAGATGAAGTGGACAACCACATCAATTAAAAAGTGTCAATAAATCATAAAAGAAAAGAAAATGTTAAATTAATTTAATTGATGTGGTTGTCCACCTCATATGCCACATAAAGTGATATGAGAATGTGGTATACAAATGTGGTAAGAGTAGCATTATTCATATTAGAT

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