SE3220103

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8214
  • Prunus persica
  • SE3220103
  • Mutator
  • PrpM32
  • scaffold_6:11112987-11113717
  • TAATTTATT
  • GGCTTAAATGCTAAAATGGACCCTGTGTTTTATTACGTTGGTCAATTTAGTCCATGTGTTTCTAATTTAGCTAATTAAGTCCTTGTGTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TAATTTATT       A  C        A            T    T   T           A       C      A       AA             CAAC     A     GTGA       TT     TCTA    -------------TAAAAAA     AAACTATTTAAACATTAATTAAAAACATAATTATTTGAGTTCAACCATTGTCTAGCCATTTACCCTTATATTTGACCAGCTCCCAGCAAGATCTTCCAGAACCTAACCCTTGCCTAGCCATTTGCCCCATCCTCAGTCATGGCTCCCAGATCGTTCACACCATCTCCAACCCCCATCTCTCCCTCTTCTGTTGTATGCCTTCATTCA
         GGCTTAA TG TAAAATGG CCCTGTGTTTTA TACG TGG CAATTTAGTCC TGTGTTT TAATTT GCTAATT  GTCCTTGTGTTTA    TATTA TCAAT    TCCATTC  TTAAA    AGTT                    ATTTA                                                                                                                                                                                                               
         ||||||| || |||||||| |||||||||||| |||| ||| ||||||||||| ||||||| |||||| |||||||  |||||||||||||    ||||| |||||    |||||||  |||||    ||||                    |||||                                                                                                                                                                                                                
         CCGAATT AC GTTTTACC GGGACACAAAAT GTGT ACC GTTAAATTAGG ACACAAA ATTAAA CGGTTAA  CAGGAACACAAAT    GTAAT GGTTA    AGGTAGG  AATTT    TCAG                    CAAAA                                                                                                                                                                                                               
TTATTTAAT       C  A        A            C    T   C           G       A      C       GC             ACTA     C     AATC       TC     --TA    CAATTTATACTTGTACTAAC     AAAAAAAAAACTTTTGCATATTTCGAAAAAATTTAATTTTTTTCAACTTAACTAAATTTTTATAATTTTGAAGTTAATTTGATTGTATTGTAATCCCTTTTTTTTTGAACTTTTTTACTTCCTCCGCATCAGGCCCCTCCCCTTCCCGACGAATTACTCACCTCATCACCCTTCTCCCCAACTGGTAACGTCCCACCCCCACCCACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End