Plant MITE

SE3220104

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8215
Prunus persica
SE3220104
Mutator
PrpM22
scaffold_4:1055310-1055497
TTATATAGT
TTATATAGTGGGAGCTTCTACAATGAGGAGTTAGAGTGAGGAGCTTATTTGAGGGTTTCAATGCCACCGTCAA

Secondary structure and sequence

TSD TIR

5'

3'

               CTT   C           -           C           T      GC         ATCATTT    A  --TT     CA
 TTATATAGTGGGAG   CTA AATGAGGAGTT AGAGTGAGGAG TTATTTGAGGG TTCAAT  CACCGTCAA       CAAA GT    AAGTC  
 ||||||||||||||   ||| ||||||||||| ||||||||||| ||||||||||| ||||||  |||||||||       |||| ||    |||||   
 GATATATTGCCTTT   GAT TTACTCCTCAA TCTCATTCCTC AATAAACTCCC AAGTTG  GTGGTAGTT       GTTT CA    TTTAG  
T              -CC   A           A           A           C      GC         -------    A  TTCC     TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3220104

TTATATAGTGGGAGCTTCTACAATGAGGAGTTAGAGTGAGGAGCTTATTTGAGGGTTTCAATGCCACCGTCAAATCATTTCAAAAGTTTAAGTCCATTGATTTCCTTACATTTGTTGATGGTGCGGTTGAACCCCTCAAATAAACTCCTTACTCTAAACTCCTCATTATAGCCTTTCCGTTATATAGT

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