SE3220108

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8219
  • Prunus persica
  • SE3220108
  • Mutator
  • PrpM33
  • scaffold_3:16120099-16120512
  • GCAAAATTA
  • GGGATTTTTGTAGAAATGTCACCTGAACTTATACATCAGTTTCAATTTGTCACCTTAAAGAAAAATTTAAGCAAAATGTCACCTTAAGTTTTCAAAATCCATGATTTGTCACCTGACTTTAACATCATCCAATTTTCCATCCATTTTAAAGGGTGTTTTAGTCTTTCCAATATGTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GCAAAATTA     T                            A                                    CA                         CC                                               A               T      TAT     CCCTCTTT        -A    AA
         GGGAT TTTGTAGAAATGTCACCTGAACTTATAC TCAGTTTCAATTTGTCACCTTAAAGAAAAATTTAAG  AAATGTCACCTTAAGTTTTCAAAAT  ATGATTTGTCACCTGACTTTAACATCATCCAATTTTCCATCCATTTT AAGGGTGTTTTAGTC TTCCAA   GTAAA        TTTATATA  TTTA  
         ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||   |||||        ||||||||  ||||   
         CCCTA AAACATCTTTACAGTGGACTTGAATATG AGTCAAAGTTAAACAGTGGAATTTCTTTTTAAATTC  TTTACAGTGGAATTCAAAAGTTTTA  TACTAAACAGTGGACTGAAATTGTAGTAGGTTAAAAGGTAGGTAAAA TTCCCATAAAATCAG AAGGTT   CGTTT        AAATGTAT  AAAT  
ATTAAAACG     T                            G                                    AC                         AA                                               C               T      ---     ----TACC        CG    AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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