Plant MITE

SE3220109

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8220
Prunus persica
SE3220109
Mutator
PrpM2
scaffold_5:18235786-18235976
ACACATAGA
ATGGGAGATTCTCC

Secondary structure and sequence

TSD TIR

5'

3'

ACACATAG      G       AACAACTAT    T     A                      A                   CAT   AT T  TG
        ATGGGA ATTCTCC         TTTA GTTAA GGATTGGTTACATACTTCTAAT TTGGTTGTTGGATTGCATT   TAA  G GT  
        |||||| |||||||         |||| ||||| |||||||||||||||||||||| |||||||||||||||||||   |||  | ||   
        TGCCCT TAAGAGG         AAAT CAATT CCTAACTAATGTATGAAGATTA AGTCGGCAACCTAACGTAG   ATT  C CA  
TAGATACA      G       -GTATTCAT    T     -                      G                   ---   CT T  TG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3220109

ACACATAGATGGGAGATTCTCCAACAACTATTTTATGTTAAAGGATTGGTTACATACTTCTAATATTGGTTGTTGGATTGCATTCATTAAATGTGTTGGTACTCTCTTAGATGCAATCCAACGGCTGAGATTAGAAGTATGTAATCAATCCTTAACTTAAATACTTATGGGAGAATGTCCCGTACATAGAT

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