SE3250110

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8221
  • Prunus persica
  • SE3250110
  • PIF/harbinger
  • PrpP16
  • scaffold_8:7235296-7235666
  • TAA
  • AGAGCATCTCCAACCGATATGTCAAATTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA          C  CC  TAT       T  ---TACA    CA    ----     AAAAA   -  GGTTAATGTTGCTCCAACCGAATAGTCAAATCCTACATGGATTTGAAGGCTAGAAGAGATATGTCAAAAATAACATAACAAAAAGCTTGATGTCAAATATTTTTTTAGTCATAGACCCCAT
  AGAGCATCTC AA  GA   GTCAAAT GC       TGGA  TGAA    ATGGC     TTG AA                                                                                                                         
  |||||||||| ||  ||   ||||||| ||       ||||  ||||    |||||     ||| ||                                                                                                                         T
  TCTCGTAGAG TT  CT   CAGTTTA CG       ATTT  ACTT    TACCG     CAC GT                                                                                                                         
AA          A  CC  CTT       -  TTTTAAA    AA    AAAC     -AATA   C  TAAACTGTGAAACTTTTTTAAATTGAGGTGGACTTTACGGTTTATAGTACAATAAAATAATATAAAAATTTTCGTTTACTCTGGGTATACTACGTATTTCAAAATTTTCTCTCATTTACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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