SE3230114

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8225
  • Prunus persica
  • SE3230114
  • hAT
  • Prph22
  • scaffold_8:11894254-11894872
  • GTGATGAC
  • GTGATGACCAGGGACGGACC

Secondary structure and sequence

TSD    TIR
5'



3'
  G  G      G   G   CAGGA TT  AAA    G         TTTACCTTACATACAA   TA    AAACTCAACGGTACGAGTAAATTTTATTGATAACAAAAAAATACACGAGAGACATAATGAGTCTTACCCCTCAAATAACACTTATATAAGTTGCGCTATTCAAGTCTTCACAACATTAAAATCACTAATTATTGATTCATTATTTATATTATCAGCAAATTCTCTTTCAATATGAAGTAGGATACAATTAGCAAGAAACTCATCACCTATCTTATTCCAAAGTCGATTTTTAATAAGTCTCATACAT
GT AT ACCAGG ACG ACC     T  CA   TGAC TGGGCTAAA                ACC  TTGA                                                                                                                                                                                                                                                       
|| || |||||| ||| |||     |  ||   |||| |||||||||                |||  ||||                                                                                                                                                                                                                                                        
CA TA TGGTCC TGC TGG     A  GT   ATTG ACCCGATTT                AGG  TCCG                                                                                                                                                                                                                                                       
  G  G      G   A   --ATG TT  ACG    A         ---------------C   --    TCGAACAAAAAAAATATCTGATTTAATTATAAGATCGGATCCAGTAGATTTATTTTATAATAATTAATTAGGGTAATTCTGAACTGATTGGTGGATTTATTTTATAATAATTGATATAATCCTGATCCAACTGGTTGTTTATTTATTTTTCTTGTTTTAATCGTCTTTGTATGATGAACTAACTATCTAACTAAGTAAACCAAGATTGAGAAGAACACAGATGTTGTTGTTGTCTTACTCGTAAAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End