SE3250117

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8228
  • Prunus persica
  • SE3250117
  • PIF/harbinger
  • PrpP7
  • scaffold_8:16270798-16271210
  • TTA
  • AGAGCATCTACAATCATGCTTCCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              CAT        --T    - --- A ----   AATTTAGCTAAAAACACACAAAAGTTATTTTAGGAGCTCACTATAAAATTTGAACTTCAATCAAACTCCCTAGTTTCATGAGTCATAAATACTATAGTTATTTTTTAATTCAATATGATTGGTTCATCTCTTTTAAAAATAATATAAAAATATAGTTAACATT
  AGAGCATCTACAAT   GCTTCCTA   TTTT T   A T    TAA                                                                                                                                                                   
  ||||||||||||||   ||||||||   |||| |   | |    |||                                                                                                                                                                   A
  TCTCGTAGGTGTTA   TGAGGGAT   GTGT G   T C    TAA                                                                                                                                                                   
AT              -CC        TTG    A GAA - TATT   AATCCTTCCTTAAACTTTTTATGTTGAGGTTGGTAAGAGGGATCGGTGGAGGATTTTATCCCTCTGGAGATCCTCGAAGATTTATACGCTTCTCTCTTTTCTGAGGATCACCGAGGTATAATAAATTACAACGAAACAAAATACGTATCAAATTTGAAAACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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