SE3250121

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8232
  • Prunus persica
  • SE3250121
  • PIF/harbinger
  • PrpP19
  • scaffold_8:505603-506316
  • TTA
  • AGAGCATCTCCACC

Secondary structure and sequence

TSD    TIR
5'



3'
TT       C      CATAA G         A     ---      -  CA  - G   CCACTATTCACGTGAATAGTGTCAGGCTTGCCATTTGTGGTTCCATCCATGAGGGCTAAGTCTAGGGCAAGTCTAAGGCAATTACTATTCACTTAAATTTATTTTATTTTATTTATACTTAAACCATTGATTTTGATAAGCTTTTCGGATAAGATTTTCAATTCCCAAGTGTTAATATTTATCGTAAAATCCTCACCTAAAAATCAAGATAACATTTTCGGACAAAATTTTGAAATTAAATTGGTGTGGAAAGTGAATAATATTGGTAGGTATGTATAGAAAAAAATTTCAGAATTTTTTGA
  AGAGCAT TCCACC     G GCTAAGTCT GGGCA   AGGGCA AG  AG G CTG                                                                                                                                                                                                                                                                                                              
  ||||||| ||||||     | ||||||||| |||||   |||||| ||  || | |||                                                                                                                                                                                                                                                                                                              T
  TCTCGTA AGGTGG     C TGGTTTGGA CCCGT   CCGGGG GA  CC T CGG                                                                                                                                                                                                                                                                                                              
AT       C      --CGA G         -     TTT      G  --  G -   GTAAGGTCGAGGTCGCGTGTTGTTACTCGGTCCCGTTTACCACCCAGGGTGGTCGGACCCGTTCGGGTTTCCGATTAAGACGGACCCGACAACGGGAGCCCGACGACTGTAGTCGTACTACAGTCGTCGACTAAAAGTTTAAAAAATAATGACAACCTGGGTTGATCGGGTGTAACGGGTTATCAATGTTCGGTACACCGAAGAGGACCTCGGAGGCTAGTTTTTTATAACGTGTTAGGTTGCTAACAGGTTAAAAACCGAAATTTTTTAACTTGTTTTTTAGTTTTTAAAATTTTTTTATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End